Composition of human specific slow codons and slow di codons in SARS CoV and 2019 nCoV are lower than other coronaviruses suggesting a faster protein synthesis rate of SARS CoV and 2019nCoV 1st edition by Chu Wen Yang, Mei Fang Chen

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Author: Chu-Wen Yang, Mei-Fang Chen

No organism has a full set of tRNA species for all 61 amino acid-encoded codons.¹ Codons without cognate tRNA gene can be referred to as slow codons of the organism. These codons are organism specific codons because different organisms have different tRNA gene compositions. For example, 13 amino acid-encoding codons have no cognate tRNA genes in the human genome. Studies have revealed by ribosomal profiling experiments that translation of codons by rare tRNAs and non-cognate isoacceptor tRNAs (by wobble base pairing of codons and tRNAs) reduces translation efficiency^2 , 3 ,.⁴ Moreover, it has been reported that the efficiency of translating a particular codon is affected by the nature of the immediately adjacent codons.^5 , 6 Two consecutive slow codons (slow di-codons) lead to a much slower translation rate. Conversely, coding sequences (CDSs) with low composition of slow codons and slow di-codons may possess fast translation rates.

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Chu Wen Yang,Mei Fang Chen,Composition